Index

_

__init__() (lineage.generator.SyntheticRelatedGenerator method) (lineage.Individual method) (lineage.individual.Individual method) (lineage.Lineage method) (lineage.resources.Resources method) (lineage.SyntheticRelatedGenerator method)

C

create_example_datasets() (lineage.Lineage method) (lineage.resources.Resources method)

create_individual() (lineage.Lineage method)

F

find_discordant_snps() (lineage.Lineage method)

find_shared_dna() (lineage.Lineage method)

G

generate_parent_child_pair() (lineage.generator.SyntheticRelatedGenerator method) (lineage.SyntheticRelatedGenerator method) generate_sibling_pair() (lineage.generator.SyntheticRelatedGenerator method) (lineage.SyntheticRelatedGenerator method) get_all_resources() (lineage.resources.Resources method) get_cytoBand_hg19() (lineage.resources.Resources method)

get_genetic_map() (lineage.resources.Resources method) get_genetic_map_1000G_GRCh37() (lineage.resources.Resources method) get_genetic_map_HapMapII_GRCh37() (lineage.resources.Resources method) get_kgXref_hg19() (lineage.resources.Resources method) get_knownGene_hg19() (lineage.resources.Resources method) get_var_name() (lineage.Individual method) (lineage.individual.Individual method)

I

Individual (class in lineage) (class in lineage.individual)

L

lineage module Lineage (class in lineage) lineage.generator module

lineage.individual module lineage.resources module lineage.visualization module

M

module lineage lineage.generator lineage.individual lineage.resources lineage.visualization

N

name (lineage.Individual property) (lineage.individual.Individual property)

P

plot_chromosomes() (in module lineage.visualization)

R

Resources (class in lineage.resources)

S

save_parent_child_pair() (lineage.generator.SyntheticRelatedGenerator method) (lineage.SyntheticRelatedGenerator method) save_sibling_pair() (lineage.generator.SyntheticRelatedGenerator method) (lineage.SyntheticRelatedGenerator method)

SyntheticRelatedGenerator (class in lineage) (class in lineage.generator)